ngsFetch
Fetching NGS data from the public server using ffq and aria2.
Usage
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23 | $ docker run --rm naotokubota/snakengs:latest ngsFetch -h
____ __ __
/\ _`\ /\ \__ /\ \
___ __ ____\ \ \L\_\ __\ \ ,_\ ___\ \ \___
/' _ `\ /'_ `\ /',__\\ \ _\/'__`\ \ \/ /'___\ \ _ `\
/\ \/\ \/\ \L\ \/\__, `\\ \ \/\ __/\ \ \_/\ \__/\ \ \ \ \
\ \_\ \_\ \____ \/\____/ \ \_\ \____\\ \__\ \____\\ \_\ \_\
\/_/\/_/\/___L\ \/___/ \/_/\/____/ \/__/\/____/ \/_/\/_/
/\____/
\_/__/
Version: v0.1
ngsFetch v0.1 -Pipeline for fetching NGS data-
Usage: ngsFetch -i ID -o output_dir
-h Display help
-v Show version
-i ID
-o Output directory
|
You are supposed to get the data from the public server using the ID provided by the user. The data will be stored in the output directory after checking the MD5 to ensure the integrity of the data.
Please refer to the tutorial for more information.
Software
Docker image