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SnakeNgs
UMI count from single-nucleus RNA-seq
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NaotoKubota/SnakeNgs
SnakeNgs
NaotoKubota/SnakeNgs
Home
Installation
Tutorial
Tutorial
Fetching public NGS data
QC and mapping for RNA-seq
UMI count from single-nucleus RNA-seq
QC, mapping, and peak calling for ChIP-seq/ATAC-seq
Usage
Usage
Fetching
Fetching
ngsFetch
RNA-seq
RNA-seq
preprocessing_RNAseq.smk
preprocessing_RNAseq_single.smk
rMATS.smk
SUPPA2_diffSplice.smk
Whippet.smk
MAJIQ.smk
LeafCutter.smk
snRNA-seq
snRNA-seq
kb-nac.smk
ChIP-seq
ChIP-seq
preprocessing_ChIPseq.smk
preprocessing_ChIPseq_single.smk
callpeak_ChIPseq.smk
ATAC-seq
ATAC-seq
callpeak_ATACseq.smk
differential_ATACseq.smk
footprinting_ATACseq.smk
iCLIP-seq & HITSCLIP
iCLIP-seq & HITSCLIP
preprocessing_iCLIPseq.smk
preprocessing_HITSCLIP.smk
File format conversion
File format conversion
bam2cram.smk
UMI count from single-nucleus RNA-seq
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